Protein Information

Protein ZmC3H41
ZmC3H41 is a protein in the C3H family.
Information
TF Name:	ZmC3H41
Species:	Maize
TF Family:	C3H
Gene Name(Synonym):	C3H41
Uniprot ID:	A0A1D6PDQ1
Subgenome:	1

ZmC3H41 is a protein in the C3H family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.

Overview of domains present in v5 transcripts
	PF00642
Zm00001eb014140_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs

Gene ID	Type	Sequence	FIMO	Position
Zm00001d028828	DAPseq	sequence	fimo	position
Zm00001d028828	DAPseq	sequence	fimo	position
Zm00001d028828	ChIPseq	sequence	fimo	position
Zm00001d028828	PChIPseq	sequence	fimo	position

Interactions where ZmC3H41 is the regulator

There are no protein-dna interactions that fit this criteria.

Interactions where ZmC3H41 is the target
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There are 71 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb014140_T001 from maize genome v5

Amino Acid Sequence
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Color Coding: None Secondary Structure Domain

MEGELPFLSPPRPSRVSFDGRYGFGSPTWVSQLGTLRDSPSLCVSDGCDGGNGRSCFGSPTWGSPLETLFNAPSSLVSDS
RGAGNGPILSTPTSPLETLLNSTSSCVSDSRGSGSVFGTPKMALPLETLLDSPSSPISDIRGGGNGSGLSTTKQASPLVP
LLNSLSDSRGCGNNSSPRTSKEQDSEMVQKAETLLRAITERYDDCFLRLRYTTAELADLRLERARLGAENLHLSLLLEEL
DAAEQSKQASAVALTPLPNPAQAEAASTPKSISIRSKDFLSKKQPQGVATPHRLRVRPSPAMEDAAENKDGGEVEVEVEA
FRQGAVKTEMCNKWERGVCPYDGRCRFAHGMEELRPVIRHPRYKTLPCQLFAAPSGCPYGHRCHFRHSMAPTAAESW

Secondary Structure Color Code
BEND	region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P	left-handed polyproline helix
HELX_RH_3T_P	right-handed 3-10 helix
HELX_RH_AL_P	right-handed alpha helix
HELX_RH_PI_P	right-handed pi helix
STRN	beta strand
TURN_TY1_P	type I turn
UNDETERMINED	no data available

Domains Present
PF00642
PF00642
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Nucleotide Sequence
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AACCTCCCTTCCCTCCAATTTCCCA...

GRMZM2G427438_T01 from maize genome v3

Related TFome: pUT4233

Amino Acid Sequence
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Nucleotide Sequence
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AACCTCCCTTCCCTCCAATTTCCCA...

Zm00001d028828_T001 from maize genome v4

Amino Acid Sequence
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Nucleotide Sequence
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ATGGAGGGGGAGCTGCCATTCTTGT...

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Protein ZmC3H41

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs

Interactions where ZmC3H41 is the regulator

Interactions where ZmC3H41 is the target
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Zm00001eb014140_T001 from maize genome v5

Amino Acid Sequence
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Color Coding: None Secondary Structure Domain

Nucleotide Sequence
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Expand

GRMZM2G427438_T01 from maize genome v3

Amino Acid Sequence
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Nucleotide Sequence
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Zm00001d028828_T001 from maize genome v4

Amino Acid Sequence
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Nucleotide Sequence
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